PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.267170.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 170aa    MW: 18748.2 Da    PI: 6.238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.267170.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-1179126454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  Cucsa.267170.3  79 SKACREKLRRDRLNDKFLELGSILDPG---RPPKTDKAAILVDAVRMVNQL 126
                     6789**********************8...89***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-1375146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.28775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-979126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1379149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-883131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVSPENPNWL FDYGLIEDIP VPDGNFPVTS SSFSWPIQPF NGSHDSGVEI DGSLADLDGH  60
LESGSKKRVR SDSCSASSSK ACREKLRRDR LNDKFLELGS ILDPGRPPKT DKAAILVDAV  120
RMVNQLRGET EKLKESNSSL QEKIKELKAS LHGFLCQICL HFMHLHGET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818261e-108LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132581e-108LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151962.21e-103PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-57ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0L7N81e-103A0A0A0L7N8_CUCSA; Uncharacterized protein
STRINGGLYMA06G41620.12e-75(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-51bHLH family protein